Sequence Similarity Clusters for the Entities in PDB 1JW0

Entity #1 | Chains: A
cephalosporin acylase alpha chain protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 12689
95 % 10 13 4449 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 10 13 4495
70 % 10 13 4399
50 % 10 13 4229
40 % 10 13 3905
30 % 10 13 3555
Entity #2 | Chains: B
cephalosporin acylase beta chain protein, length: 520 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28569
95 % 10 13 4407 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 10 13 4452
70 % 10 13 4357
50 % 10 13 4191
40 % 10 13 3973
30 % 10 13 3619

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1GK1 1 A, C CEPHALOSPORIN ACYLASE RESIDUES 36-188 306 3.5.1.93 | Details
2 1JW0 1 A cephalosporin acylase alpha chain RESIDUES 30-187 293 3.5.1.93 | Details
3 1GK0 1 A, C CEPHALOSPORIN ACYLASE RESIDUES A8-A160 306 3.5.1.93 | Details
4 1JVZ 1 A cephalosporin acylase alpha chain RESIDUES 30-187 293 3.5.1.93 | Details