Sequence Similarity Clusters for the Entities in PDB 1JVZ

Entity #1 | Chains: A
cephalosporin acylase alpha chain protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 10837
95 % 13 13 4281 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 13 13 4311
70 % 13 13 4241
50 % 13 13 4074
40 % 13 13 3897
30 % 13 13 3627
Entity #2 | Chains: B
cephalosporin acylase beta chain protein, length: 520 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25894
95 % 13 13 3973 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 13 13 4014
70 % 13 13 3971
50 % 13 13 3855
40 % 13 13 3703
30 % 13 13 3460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures