Sequence Similarity Clusters for the Entities in PDB 1JVQ

Entity #1 | Chains: I,L
ANTITHROMBIN-III protein, length: 432 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 1104
95 % 5 34 1005 Flexibility: Medium
Max RMSD: 20.1, Avg RMSD: 7.0
PDBFlex
90 % 5 34 1034
70 % 5 35 1039
50 % 5 35 1081
40 % 5 35 1094
30 % 100 178 184
Entity #2 | Chains: C
P14-P8 reactive loop peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D
exogenous Cholecystokinin tetrapeptide protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures