Sequence Similarity Clusters for the Entities in PDB 1JVM

Entity #1 | Chains: A,B,C,D
Voltage-gated potassium channel protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 15 2971
95 % 46 58 655 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.9
PDBFlex
90 % 46 58 681
70 % 46 59 683
50 % 46 61 631
40 % 46 61 664
30 % 46 61 657

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures