Sequence Similarity Clusters for the Entities in PDB 1JVD

Entity #1 | Chains: A,B
UDPGLCNAC PYROPHOSPHORYLASE (AGX2) protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16851
95 % 4 4 8204 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 4 5 6541
70 % 4 5 6386
50 % 4 5 5941
40 % 9 10 3204
30 % 10 11 2878

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.