Sequence Similarity Clusters for the Entities in PDB 1JVD

Entity #1 | Chains: A,B
UDPGLCNAC PYROPHOSPHORYLASE (AGX2) protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23578
95 % 4 4 9567 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 4 5 7314
70 % 4 5 7115
50 % 4 5 6575
40 % 9 10 3430
30 % 10 11 3043

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures