Sequence Similarity Clusters for the Entities in PDB 1JVA

Entity #1 | Chains: A,B
VMA1-DERIVED HOMING ENDONUCLEASE X10SSS protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41256
95 % 2 7 6713 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 2 7 6703
70 % 2 7 6505
50 % 2 7 6059
40 % 2 7 5637
30 % 2 7 4963

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures