Sequence Similarity Clusters for the Entities in PDB 1JVA

Entity #1 | Chains: A,B
VMA1-DERIVED HOMING ENDONUCLEASE X10SSS protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32241
95 % 2 7 6240 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 2 7 6231
70 % 2 7 6078
50 % 2 7 5679
40 % 2 7 5335
30 % 2 7 4785

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.