Sequence Similarity Clusters for the Entities in PDB 1JV5

Entity #1 | Chains: A
Ig kappa chain precursor V region protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69282
95 % 3 4 13276 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 3 8 6511
70 % 85 191 72
50 % 129 308 21
40 % 379 933 5
30 % 426 1061 7
Entity #2 | Chains: B
Ig chain heavy chain precursor V region protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68288
95 % 1 1 47041
90 % 1 1 44596
70 % 23 85 260
50 % 235 580 7
40 % 380 933 5
30 % 427 1061 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures