Sequence Similarity Clusters for the Entities in PDB 1JV5

Entity #1 | Chains: A
Ig kappa chain precursor V region protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 20226
95 % 2 3 18334 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 3 8 6639
70 % 93 215 66
50 % 129 317 23
40 % 145 361 27
30 % 2169 7175 1
Entity #2 | Chains: B
Ig chain heavy chain precursor V region protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58992
95 % 1 1 48235
90 % 1 1 47065
70 % 23 87 261
50 % 244 609 6
40 % 1769 5756 1
30 % 2170 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures