Sequence Similarity Clusters for the Entities in PDB 1JV2

Entity #1 | Chains: A
INTEGRIN, ALPHA V protein, length: 957 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 11 5637
95 % 7 14 4617
90 % 7 14 4645
70 % 7 14 4550
50 % 7 14 4369
40 % 7 14 4164
30 % 8 16 3238
Entity #2 | Chains: B
PLATELET MEMBRANE GLYCOPROTEIN IIIA BETA SUBUNIT protein, length: 692 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 16773
95 % 8 16 3710 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 8 16 3762
70 % 8 16 3709
50 % 8 16 3602
40 % 10 22 1755
30 % 10 22 1712

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures