Sequence Similarity Clusters for the Entities in PDB 1JV2

Entity #1 | Chains: A
INTEGRIN, ALPHA V protein, length: 957 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 5508
95 % 7 11 6142 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 7 11 6131
70 % 7 11 5986
50 % 7 11 5601
40 % 7 11 5260
30 % 8 13 3773
Entity #2 | Chains: B
PLATELET MEMBRANE GLYCOPROTEIN IIIA BETA SUBUNIT protein, length: 692 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 16413
95 % 8 13 4517 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.9
PDBFlex
90 % 8 13 4543
70 % 8 13 4456
50 % 8 13 4286
40 % 10 19 1896
30 % 10 19 1837

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.