Sequence Similarity Clusters for the Entities in PDB 1JV2

Entity #1 | Chains: A
INTEGRIN, ALPHA V protein, length: 957 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 11066
95 % 7 14 4859
90 % 7 14 4900
70 % 7 14 4769
50 % 7 14 4559
40 % 7 14 4301
30 % 8 16 3277
Entity #2 | Chains: B
PLATELET MEMBRANE GLYCOPROTEIN IIIA BETA SUBUNIT protein, length: 692 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 13 4960
95 % 8 16 3925 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 8 16 3979
70 % 8 16 3904
50 % 8 16 3804
40 % 10 22 1844
30 % 10 22 1772

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures