Sequence Similarity Clusters for the Entities in PDB 1JUP

Entity #1 | Chains: A,B,D,E
HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'REGION protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 13 740
95 % 20 28 380 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.8
PDBFlex
90 % 20 28 407
70 % 20 28 450
50 % 20 28 513
40 % 20 28 556
30 % 20 28 549

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures