Sequence Similarity Clusters for the Entities in PDB 1JUI

Entity #1 | Chains: A,B,C,D
Concanavalin-Br protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 58 184
95 % 68 85 142 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 70 90 147
70 % 91 113 137
50 % 91 113 167
40 % 91 113 182
30 % 91 113 200
Entity #2 | Chains: P,Q,R,S
10-mer Peptide protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.