Sequence Similarity Clusters for the Entities in PDB 1JUF

Entity #1 | Chains: A
H2-Db major histocompatibility antigen protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 66 207
95 % 9 68 257 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 9 70 265
70 % 304 740 6
50 % 308 754 7
40 % 321 806 9
30 % 347 930 12
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 189 81
95 % 50 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 50 234 66
70 % 366 944 4
50 % 371 966 3
40 % 371 966 6
30 % 371 966 9
Entity #3 | Chains: C
H13b peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures