Sequence Similarity Clusters for the Entities in PDB 1JUF

Entity #1 | Chains: A
H2-Db major histocompatibility antigen protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 63 200
95 % 9 67 255 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 9 69 267
70 % 298 727 6
50 % 298 732 6
40 % 314 783 10
30 % 340 909 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 135 97
95 % 50 230 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 50 230 66
70 % 360 924 4
50 % 365 946 3
40 % 365 946 7
30 % 365 946 12
Entity #3 | Chains: C
H13b peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures