Sequence Similarity Clusters for the Entities in PDB 1JTT

Entity #1 | Chains: A
Vh Single-Domain Antibody protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66605
95 % 3 5 9676 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 7909
70 % 140 383 9
50 % 200 580 7
40 % 325 933 5
30 % 367 1061 7
Entity #2 | Chains: L
Lysozyme protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 520 663 3
95 % 570 716 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 579 733 5
70 % 779 953 7
50 % 783 961 8
40 % 802 995 11
30 % 802 995 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures