Sequence Similarity Clusters for the Entities in PDB 1JTT

Entity #1 | Chains: A
Vh Single-Domain Antibody protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68375
95 % 3 5 9972 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 8158
70 % 143 399 9
50 % 203 599 6
40 % 328 956 5
30 % 370 1085 7
Entity #2 | Chains: L
Lysozyme protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 523 668 3
95 % 573 721 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 582 738 5
70 % 784 961 7
50 % 788 969 8
40 % 807 1003 11
30 % 807 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures