Sequence Similarity Clusters for the Entities in PDB 1JTT

Entity #1 | Chains: A
Vh Single-Domain Antibody protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65757
95 % 3 5 9556 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 7813
70 % 135 372 9
50 % 194 566 7
40 % 318 916 5
30 % 359 1042 7
Entity #2 | Chains: L
Lysozyme protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 512 655 3
95 % 562 708 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 571 725 5
70 % 768 942 7
50 % 772 950 8
40 % 791 984 11
30 % 791 984 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.