Sequence Similarity Clusters for the Entities in PDB 1JTT

Entity #1 | Chains: A
Vh Single-Domain Antibody protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66270
95 % 3 5 10377 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 8438
70 % 147 411 9
50 % 210 613 6
40 % 1473 5834 1
30 % 1797 7269 1
Entity #2 | Chains: L
Lysozyme protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 571 717 3
95 % 586 734 3 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 595 751 5
70 % 797 974 7
50 % 801 982 8
40 % 821 1017 10
30 % 821 1017 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures