Sequence Similarity Clusters for the Entities in PDB 1JTT

Entity #1 | Chains: A
Vh Single-Domain Antibody protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67601
95 % 3 5 9826 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 8039
70 % 143 397 9
50 % 203 594 7
40 % 328 948 5
30 % 370 1077 7
Entity #2 | Chains: L
Lysozyme protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 523 666 3
95 % 573 719 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 582 736 5
70 % 782 956 7
50 % 786 964 8
40 % 805 998 11
30 % 805 998 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures