Sequence Similarity Clusters for the Entities in PDB 1JTP

Entity #1 | Chains: A,B
Single-Domain Antibody protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44112
95 % 2 5 9633 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 6 7874
70 % 109 379 9
50 % 150 576 7
40 % 236 929 5
30 % 265 1056 7
Entity #2 | Chains: L,M
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 4105
95 % 8 13 4487 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 472 730 5
70 % 648 950 7
50 % 651 958 8
40 % 661 992 11
30 % 661 992 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.