Sequence Similarity Clusters for the Entities in PDB 1JTP

Entity #1 | Chains: A,B
Single-Domain Antibody protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13072
95 % 2 5 10312 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 6 8384
70 % 117 409 9
50 % 158 609 6
40 % 906 5756 1
30 % 1114 7175 1
Entity #2 | Chains: L,M
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 4182
95 % 8 13 4520 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 490 751 5
70 % 667 974 7
50 % 670 982 8
40 % 680 1016 10
30 % 680 1016 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures