Sequence Similarity Clusters for the Entities in PDB 1JTO

Entity #1 | Chains: A,B
Vh Single-Domain Antibody protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23591
95 % 4 5 9986 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 6 8169
70 % 251 402 9
50 % 358 603 7
40 % 575 963 5
30 % 641 1093 7
Entity #2 | Chains: L,M
Lysozyme protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 606 668 3
95 % 658 721 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 672 738 5
70 % 889 961 7
50 % 895 969 8
40 % 925 1003 11
30 % 925 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures