POP-OUT | CLOSE

An Information Portal to 107049 Biological Macromolecular Structures

Degenerate interfaces in antigen-antibody complexes
Sequence Clustering and Redundancy Reduction Results
1JTO
Sequence Clusters for the Sequence Entities in PDB 1JTO
Entity #1: Chains: A,B - Vh Single-Domain Antibody protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 17440
95% 4 5 7433
90% 4 6 6072
70% 150 213 27
50% 237 351 12
40% 420 619 9
30% 476 730 9
Entity #2: Chains: L,M - Lysozyme protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 454 507 3
95% 502 556 4
90% 516 573 4
70% 726 788 6
50% 733 797 6
40% 763 831 10
30% 763 831 16
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.