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An Information Portal to 106082 Biological Macromolecular Structures

Degenerate interfaces in antigen-antibody complexes
Sequence Clustering and Redundancy Reduction Results
1JTO
Sequence Clusters for the Sequence Entities in PDB 1JTO
Entity #1: Chains: A,B - Vh Single-Domain Antibody protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 17246
95% 4 5 7373
90% 4 6 6013
70% 148 209 26
50% 235 346 12
40% 418 613 8
30% 474 724 8
Entity #2: Chains: L,M - Lysozyme protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 443 496 3
95% 491 545 4
90% 505 562 4
70% 715 777 6
50% 722 786 6
40% 752 820 9
30% 752 820 15
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.