Sequence Similarity Clusters for the Entities in PDB 1JTO

Entity #1 | Chains: A,B
Vh Single-Domain Antibody protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22492
95 % 4 5 9556 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 6 7813
70 % 235 372 9
50 % 341 566 7
40 % 556 916 5
30 % 620 1042 7
Entity #2 | Chains: L,M
Lysozyme protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 594 655 3
95 % 646 708 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 660 725 5
70 % 872 942 7
50 % 878 950 8
40 % 908 984 11
30 % 908 984 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.