POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

Degenerate interfaces in antigen-antibody complexes
Sequence Clustering and Redundancy Reduction Results
1JTO
Sequence Clusters for the Sequence Entities in PDB 1JTO
Entity #1: Chains: A,B - Vh Single-Domain Antibody protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 17080
95% 4 5 7300
90% 4 6 5946
70% 144 205 27
50% 230 340 13
40% 412 605 8
30% 468 716 8
Entity #2: Chains: L,M - Lysozyme protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 437 490 3
95% 485 539 4
90% 499 556 4
70% 709 771 6
50% 716 780 6
40% 746 814 9
30% 746 814 14
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.