POP-OUT | CLOSE

An Information Portal to 105025 Biological Macromolecular Structures

Degenerate interfaces in antigen-antibody complexes
Sequence Clustering and Redundancy Reduction Results
1JTO
Sequence Clusters for the Sequence Entities in PDB 1JTO
Entity #1: Chains: A,B - Vh Single-Domain Antibody protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16937
95% 4 5 7241
90% 4 6 5894
70% 141 202 27
50% 227 336 13
40% 409 600 8
30% 465 709 9
Entity #2: Chains: L,M - Lysozyme protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 433 486 3
95% 481 535 4
90% 495 552 4
70% 705 767 6
50% 712 776 6
40% 742 810 9
30% 742 810 14
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.