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Degenerate interfaces in antigen-antibody complexes
Sequence Clustering and Redundancy Reduction Results
1JTO
Sequence Clusters for the Sequence Entities in PDB 1JTO
Entity #1: Chains: A,B - Vh Single-Domain Antibody protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16670
95% 4 5 7120
90% 4 6 5790
70% 136 194 30
50% 218 320 15
40% 395 576 8
30% 449 684 9
Entity #2: Chains: L,M - Lysozyme protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 407 460 3
95% 455 509 5
90% 469 526 5
70% 679 741 6
50% 686 750 6
40% 716 784 9
30% 716 784 14
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.