Sequence Similarity Clusters for the Entities in PDB 1JTH

Entity #1 | Chains: A,C
SNAP25 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46972
95 % 1 1 35094
90 % 4 18 1634
70 % 4 18 1650
50 % 4 19 1620
40 % 4 19 1640
30 % 4 19 1609
Entity #2 | Chains: B,D
syntaxin 1a protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 20 1137
95 % 4 20 1545 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.3
PDBFlex
90 % 4 20 1570
70 % 4 20 1587
50 % 5 21 1478
40 % 5 21 1495
30 % 6 23 1363

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.