Sequence Similarity Clusters for the Entities in PDB 1JTH

Entity #1 | Chains: A,C
SNAP25 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39131
95 % 1 1 33068 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 4 18 1740
70 % 4 18 1753
50 % 4 19 1750
40 % 4 19 1744
30 % 4 19 1706
Entity #2 | Chains: B,D
syntaxin 1a protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 20 1382
95 % 4 20 1633 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.3
PDBFlex
90 % 4 20 1667
70 % 4 20 1692
50 % 5 21 1562
40 % 5 21 1557
30 % 6 23 1425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures