Sequence Similarity Clusters for the Entities in PDB 1JTH

Entity #1 | Chains: A,C
SNAP25 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48178
95 % 1 1 35994 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 4 18 1678
70 % 4 18 1695
50 % 4 19 1668
40 % 4 19 1683
30 % 4 19 1644
Entity #2 | Chains: B,D
syntaxin 1a protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 20 1183
95 % 4 20 1586 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.3
PDBFlex
90 % 4 20 1615
70 % 4 20 1629
50 % 5 21 1514
40 % 5 21 1527
30 % 6 23 1385

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures