Sequence Similarity Clusters for the Entities in PDB 1JTH

Entity #1 | Chains: A,C
SNAP25 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47585
95 % 1 1 35543 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 4 18 1657
70 % 4 18 1673
50 % 4 19 1641
40 % 4 19 1659
30 % 4 19 1625
Entity #2 | Chains: B,D
syntaxin 1a protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 20 1152
95 % 4 20 1568 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.3
PDBFlex
90 % 4 20 1595
70 % 4 20 1608
50 % 5 21 1492
40 % 5 21 1511
30 % 6 23 1375

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.