Sequence Similarity Clusters for the Entities in PDB 1JTD

Entity #1 | Chains: A
TEM-1 beta-lactamase protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26974
95 % 62 70 291 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.7
PDBFlex
90 % 69 77 281
70 % 114 123 209
50 % 295 328 68
40 % 323 360 51
30 % 330 367 70
Entity #2 | Chains: B
beta-lactamase inhibitor protein II protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8671
95 % 2 3 8978
90 % 2 3 8895
70 % 2 3 8549
50 % 2 3 7762
40 % 2 3 7150
30 % 2 3 6325

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.