Sequence Similarity Clusters for the Entities in PDB 1JTD

Entity #1 | Chains: A
TEM-1 beta-lactamase protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 2987
95 % 67 75 283 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.6
PDBFlex
90 % 72 80 284
70 % 117 126 234
50 % 302 338 76
40 % 330 370 61
30 % 338 378 71
Entity #2 | Chains: B
beta-lactamase inhibitor protein II protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 9977
95 % 2 3 9768 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 9638
70 % 2 3 9197
50 % 2 3 8370
40 % 2 3 7634
30 % 2 3 6620

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures