Sequence Similarity Clusters for the Entities in PDB 1JTD

Entity #1 | Chains: A
TEM-1 beta-lactamase protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27562
95 % 65 73 280 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.7
PDBFlex
90 % 72 80 276
70 % 117 126 200
50 % 297 331 69
40 % 325 363 54
30 % 332 370 72
Entity #2 | Chains: B
beta-lactamase inhibitor protein II protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8862
95 % 2 3 9134
90 % 2 3 9050
70 % 2 3 8693
50 % 2 3 7903
40 % 2 3 7283
30 % 2 3 6441

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures