Sequence Similarity Clusters for the Entities in PDB 1JSU

Entity #1 | Chains: A
CYCLIN-DEPENDENT KINASE-2 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 263 364 21
95 % 272 379 32 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 272 379 34
70 % 272 379 41
50 % 284 404 55
40 % 291 460 43
30 % 1978 3777 2
Entity #2 | Chains: B
CYCLIN A protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 86 160
95 % 34 105 148 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 38 109 154
70 % 38 109 172
50 % 38 109 205
40 % 38 109 229
30 % 41 115 228
Entity #3 | Chains: C
P27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69422
95 % 1 1 48000
90 % 1 1 45572
70 % 1 1 40102
50 % 1 1 34284
40 % 1 1 30243
30 % 1 1 25505

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.