Sequence Similarity Clusters for the Entities in PDB 1JSO

Entity #1 | Chains: A
HAEMAGGLUTININ (HA1 CHAIN) protein, length: 325 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25468
95 % 2 3 21415 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 19 71 151
70 % 24 85 157
50 % 45 160 80
40 % 76 298 17
30 % 78 305 26
Entity #2 | Chains: B
HAEMAGGLUTININ (HA2 CHAIN) protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27432
95 % 19 75 142 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 1.1
PDBFlex
90 % 24 86 137
70 % 43 161 44
50 % 76 296 11
40 % 78 306 15
30 % 78 306 27

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.