Sequence Similarity Clusters for the Entities in PDB 1JSN

Entity #1 | Chains: A
HAEMAGGLUTININ (HA1 CHAIN) protein, length: 325 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25288
95 % 3 3 21264 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 31 71 150
70 % 36 85 155
50 % 66 160 79
40 % 106 289 17
30 % 109 296 26
Entity #2 | Chains: B
HAEMAGGLUTININ (HA2 CHAIN) protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27240
95 % 31 75 142
90 % 36 86 137
70 % 64 161 44
50 % 106 287 11
40 % 108 297 16
30 % 108 297 27

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.