Sequence Similarity Clusters for the Entities in PDB 1JSH

Entity #1 | Chains: A
HAEMAGGLUTININ (HA1 CHAIN) protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26385
95 % 2 3 22183 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 2 3 21556
70 % 2 3 19774
50 % 35 173 77
40 % 68 327 17
30 % 70 334 26
Entity #2 | Chains: B
HAEMAGGLUTININ (HA2 CHAIN) protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28347
95 % 2 3 23563 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 3 22786
70 % 2 3 20786
50 % 68 324 10
40 % 68 334 15
30 % 68 334 27

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.