Sequence Similarity Clusters for the Entities in PDB 1JSD

Entity #1 | Chains: A
HAEMAGGLUTININ (HA1 CHAIN) protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27343
95 % 1 3 22940 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 1 3 22262
70 % 1 3 20418
50 % 7 175 78
40 % 18 340 17
30 % 19 348 27
Entity #2 | Chains: B
HAEMAGGLUTININ (HA2 CHAIN) protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29331
95 % 1 3 24349
90 % 1 3 23517
70 % 1 3 21420
50 % 17 335 10
40 % 17 345 16
30 % 17 345 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures