Sequence Similarity Clusters for the Entities in PDB 1JSD

Entity #1 | Chains: A
HAEMAGGLUTININ (HA1 CHAIN) protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26362
95 % 1 3 22161 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 1 3 21535
70 % 1 3 19752
50 % 7 173 77
40 % 12 327 17
30 % 13 334 25
Entity #2 | Chains: B
HAEMAGGLUTININ (HA2 CHAIN) protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28321
95 % 1 3 23540
90 % 1 3 22764
70 % 1 3 20765
50 % 12 324 10
40 % 12 334 15
30 % 12 334 26

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.