Sequence Similarity Clusters for the Entities in PDB 1JSD

Entity #1 | Chains: A
HAEMAGGLUTININ (HA1 CHAIN) protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26948
95 % 1 3 22616 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 1 3 21955
70 % 1 3 20146
50 % 7 174 79
40 % 13 330 17
30 % 14 338 27
Entity #2 | Chains: B
HAEMAGGLUTININ (HA2 CHAIN) protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28933
95 % 1 3 24021
90 % 1 3 23204
70 % 1 3 21151
50 % 12 325 10
40 % 12 335 15
30 % 12 335 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures