Sequence Similarity Clusters for the Entities in PDB 1JSD

Entity #1 | Chains: A
HAEMAGGLUTININ (HA1 CHAIN) protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26314
95 % 1 3 23184 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 1 3 22436
70 % 1 3 20466
50 % 7 176 80
40 % 18 345 16
30 % 19 353 29
Entity #2 | Chains: B
HAEMAGGLUTININ (HA2 CHAIN) protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26313
95 % 1 3 23183 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 3 22435
70 % 1 3 20465
50 % 17 337 11
40 % 17 347 17
30 % 17 353 31

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures