Sequence Similarity Clusters for the Entities in PDB 1JRP

Entity #1 | Chains: A,C,E,G
xanthine dehydrogenase, chain A protein, length: 462 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 8019
95 % 3 6 2442 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 6 2506
70 % 3 6 2492
50 % 3 6 2485
40 % 3 6 2455
30 % 3 6 2340
Entity #2 | Chains: B,D,F,H
xanthine dehydrogenase, chain B protein, length: 777 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 2396
95 % 3 6 2411 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 6 2477
70 % 3 6 2464
50 % 3 6 2460
40 % 14 17 1222
30 % 14 17 1197

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures