Sequence Similarity Clusters for the Entities in PDB 1JRP

Entity #1 | Chains: A,C,E,G
xanthine dehydrogenase, chain A protein, length: 462 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 7685
95 % 3 6 2325 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 6 2387
70 % 3 6 2373
50 % 3 6 2357
40 % 3 6 2337
30 % 3 6 2243
Entity #2 | Chains: B,D,F,H
xanthine dehydrogenase, chain B protein, length: 777 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 2269
95 % 3 6 2297 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 6 2361
70 % 3 6 2345
50 % 3 6 2336
40 % 14 17 1171
30 % 14 17 1148

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.