Sequence Similarity Clusters for the Entities in PDB 1JRO

Entity #1 | Chains: A,C,E,G
xanthine dehydrogenase, chain A protein, length: 462 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 2543
95 % 1 6 2822 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 6 2888
70 % 1 6 2859
50 % 1 6 2815
40 % 1 6 2740
30 % 1 6 2558
Entity #2 | Chains: B,D,F,H
xanthine dehydrogenase, chain B protein, length: 777 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 2388
95 % 1 6 2676 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 6 2746
70 % 1 6 2726
50 % 1 6 2711
40 % 12 17 1314
30 % 12 17 1309

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures