Sequence Similarity Clusters for the Entities in PDB 1JR3

Entity #1 | Chains: A,B,C
DNA polymerase III subunit gamma protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 2461
95 % 1 7 1353 Flexibility: Medium
Max RMSD: 7.7, Avg RMSD: 4.5
PDBFlex
90 % 1 7 1338
70 % 1 7 1363
50 % 1 7 1407
40 % 1 7 1393
30 % 1 7 1385
Entity #2 | Chains: D
DNA polymerase III, delta subunit protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 3666
95 % 1 8 4037 Flexibility: Medium
Max RMSD: 14.8, Avg RMSD: 5.8
PDBFlex
90 % 1 8 4091
70 % 1 8 4019
50 % 1 8 3911
40 % 1 8 3720
30 % 1 8 3407
Entity #3 | Chains: E
DNA polymerase III, delta' subunit protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 4166
95 % 2 8 4510 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.8
PDBFlex
90 % 2 8 4551
70 % 2 8 4440
50 % 2 8 4267
40 % 2 8 4037
30 % 2 8 3660

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures