Sequence Similarity Clusters for the Entities in PDB 1JR3

Entity #1 | Chains: A,B,C
DNA polymerase III subunit gamma protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 1142
95 % 1 7 1275 Flexibility: Medium
Max RMSD: 7.7, Avg RMSD: 4.5
PDBFlex
90 % 1 7 1301
70 % 1 7 1330
50 % 1 7 1383
40 % 1 7 1392
30 % 1 7 1373
Entity #2 | Chains: D
DNA polymerase III, delta subunit protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 3389
95 % 1 8 4167 Flexibility: Medium
Max RMSD: 14.8, Avg RMSD: 5.8
PDBFlex
90 % 1 8 4210
70 % 1 8 4143
50 % 1 8 4002
40 % 1 8 3826
30 % 1 8 3569
Entity #3 | Chains: E
DNA polymerase III, delta' subunit protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 3742
95 % 2 8 4538 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.8
PDBFlex
90 % 2 8 4573
70 % 2 8 4480
50 % 2 8 4305
40 % 2 8 4103
30 % 2 8 3795

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures