Sequence Similarity Clusters for the Entities in PDB 1JR3

Entity #1 | Chains: A,B,C
DNA polymerase III subunit gamma protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 1127
95 % 1 7 1261 Flexibility: Medium
Max RMSD: 7.7, Avg RMSD: 4.5
PDBFlex
90 % 1 7 1290
70 % 1 7 1318
50 % 1 7 1370
40 % 1 7 1381
30 % 1 7 1360
Entity #2 | Chains: D
DNA polymerase III, delta subunit protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 3342
95 % 1 8 4108 Flexibility: Medium
Max RMSD: 14.8, Avg RMSD: 5.8
PDBFlex
90 % 1 8 4145
70 % 1 8 4087
50 % 1 8 3947
40 % 1 8 3781
30 % 1 8 3527
Entity #3 | Chains: E
DNA polymerase III, delta' subunit protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 3688
95 % 2 8 4478 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.8
PDBFlex
90 % 2 8 4504
70 % 2 8 4420
50 % 2 8 4248
40 % 2 8 4058
30 % 2 8 3751

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures