Sequence Similarity Clusters for the Entities in PDB 1JR3

Entity #1 | Chains: A,B,C
DNA polymerase III subunit gamma protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 1098
95 % 1 7 1226 Flexibility: Medium
Max RMSD: 7.7, Avg RMSD: 4.5
PDBFlex
90 % 1 7 1255
70 % 1 7 1290
50 % 1 7 1338
40 % 1 7 1353
30 % 1 7 1332
Entity #2 | Chains: D
DNA polymerase III, delta subunit protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 3253
95 % 1 8 4012 Flexibility: Medium
Max RMSD: 14.8, Avg RMSD: 5.8
PDBFlex
90 % 1 8 4050
70 % 1 8 3992
50 % 1 8 3868
40 % 1 8 3704
30 % 1 8 3458
Entity #3 | Chains: E
DNA polymerase III, delta' subunit protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 3593
95 % 2 8 4381 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.8
PDBFlex
90 % 2 8 4406
70 % 2 8 4323
50 % 2 8 4165
40 % 2 8 3981
30 % 2 8 3681

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.