1JQS

Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog


Sequence Similarity Clusters for the Entities in PDB 1JQS

Entity #1 | Chains: A
50S Ribosomal protein L11 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 19 2519
95 % 17 21 2819
90 % 17 21 2861
70 % 20 24 2379
50 % 225 229 140
40 % 228 232 153
30 % 231 235 166
Entity #2 | Chains: B
Elongation Factor G protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73699
95 % 1 1 51429
90 % 1 1 48819
70 % 1 1 42779
50 % 1 1 36490
40 % 1 1 32163
30 % 1 1 27260
Entity #3 | Chains: C
Elongation Factor G protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71627
95 % 1 1 49763
90 % 1 1 47243
70 % 1 1 41481
50 % 1 1 35372
40 % 1 1 31150
30 % 1 1 26283

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.