1JQS

Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog


Sequence Similarity Clusters for the Entities in PDB 1JQS

Entity #1 | Chains: A
50S Ribosomal protein L11 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 19 2437
95 % 17 21 2743
90 % 17 21 2788
70 % 20 24 2310
50 % 221 225 136
40 % 224 228 152
30 % 227 231 163
Entity #2 | Chains: B
Elongation Factor G protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71763
95 % 1 1 49996
90 % 1 1 47498
70 % 1 1 41739
50 % 1 1 35699
40 % 1 1 31488
30 % 1 1 26679
Entity #3 | Chains: C
Elongation Factor G protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69739
95 % 1 1 48373
90 % 1 1 45966
70 % 1 1 40475
50 % 1 1 34605
40 % 1 1 30494
30 % 1 1 25722

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.