1JQS

Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog


Sequence Similarity Clusters for the Entities in PDB 1JQS

Entity #1 | Chains: A
50S Ribosomal protein L11 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 21 2567
95 % 17 21 2879
90 % 17 21 2938
70 % 20 24 2509
50 % 234 238 152
40 % 237 241 164
30 % 240 244 176
Entity #2 | Chains: B
Elongation Factor G protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51683
95 % 1 1 42661
90 % 1 1 40615
70 % 1 1 35864
50 % 1 1 30454
40 % 1 1 26676
30 % 1 1 22268
Entity #3 | Chains: C
Elongation Factor G protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51684
95 % 1 1 42662
90 % 1 1 40616
70 % 1 1 35865
50 % 1 1 30455
40 % 1 1 26677
30 % 1 1 22269

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures