1JQS

Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog


Sequence Similarity Clusters for the Entities in PDB 1JQS

Entity #1 | Chains: A
50S Ribosomal protein L11 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 19 2356
95 % 17 21 2655
90 % 17 21 2699
70 % 20 24 2242
50 % 211 215 137
40 % 214 218 150
30 % 217 221 164
Entity #2 | Chains: B
Elongation Factor G protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69978
95 % 1 1 48771
90 % 1 1 46389
70 % 1 1 40830
50 % 1 1 34965
40 % 1 1 30845
30 % 1 1 26147
Entity #3 | Chains: C
Elongation Factor G protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67981
95 % 1 1 47168
90 % 1 1 44878
70 % 1 1 39584
50 % 1 1 33890
40 % 1 1 29864
30 % 1 1 25204

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.