1JQS

Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog


Sequence Similarity Clusters for the Entities in PDB 1JQS

Entity #1 | Chains: A
50S Ribosomal protein L11 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 19 2337
95 % 17 21 2628
90 % 17 21 2672
70 % 20 24 2224
50 % 210 214 135
40 % 213 217 150
30 % 216 220 165
Entity #2 | Chains: B
Elongation Factor G protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69384
95 % 1 1 48337
90 % 1 1 45978
70 % 1 1 40493
50 % 1 1 34675
40 % 1 1 30586
30 % 1 1 25905
Entity #3 | Chains: C
Elongation Factor G protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67402
95 % 1 1 46748
90 % 1 1 44481
70 % 1 1 39258
50 % 1 1 33609
40 % 1 1 29613
30 % 1 1 24970

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.