1JQS

Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog


Sequence Similarity Clusters for the Entities in PDB 1JQS

Entity #1 | Chains: A
50S Ribosomal protein L11 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 19 2490
95 % 17 21 2788
90 % 17 21 2829
70 % 20 24 2359
50 % 225 229 135
40 % 228 232 149
30 % 231 235 163
Entity #2 | Chains: B
Elongation Factor G protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72616
95 % 1 1 50601
90 % 1 1 48046
70 % 1 1 42219
50 % 1 1 36098
40 % 1 1 31836
30 % 1 1 26984
Entity #3 | Chains: C
Elongation Factor G protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70586
95 % 1 1 48970
90 % 1 1 46507
70 % 1 1 40948
50 % 1 1 34998
40 % 1 1 30837
30 % 1 1 26021

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.