1JQS

Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog


Sequence Similarity Clusters for the Entities in PDB 1JQS

Entity #1 | Chains: A
50S Ribosomal protein L11 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 19 2672
95 % 17 21 2966
90 % 17 21 3004
70 % 20 24 2520
50 % 228 232 150
40 % 231 235 161
30 % 234 238 168
Entity #2 | Chains: B
Elongation Factor G protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76583
95 % 1 1 53310
90 % 1 1 50515
70 % 1 1 44188
50 % 1 1 37664
40 % 1 1 33191
30 % 1 1 28130
Entity #3 | Chains: C
Elongation Factor G protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74450
95 % 1 1 51598
90 % 1 1 48900
70 % 1 1 42851
50 % 1 1 36508
40 % 1 1 32143
30 % 1 1 27121

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures