1JQS

Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog


Sequence Similarity Clusters for the Entities in PDB 1JQS

Entity #1 | Chains: A
50S Ribosomal protein L11 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 19 2641
95 % 17 21 2929
90 % 17 21 2967
70 % 20 24 2485
50 % 228 232 147
40 % 231 235 158
30 % 234 238 166
Entity #2 | Chains: B
Elongation Factor G protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75736
95 % 1 1 52731
90 % 1 1 49986
70 % 1 1 43736
50 % 1 1 37282
40 % 1 1 32850
30 % 1 1 27838
Entity #3 | Chains: C
Elongation Factor G protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73633
95 % 1 1 51046
90 % 1 1 48394
70 % 1 1 42421
50 % 1 1 36147
40 % 1 1 31822
30 % 1 1 26846

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures