1JQS

Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog


Sequence Similarity Clusters for the Entities in PDB 1JQS

Entity #1 | Chains: A
50S Ribosomal protein L11 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 19 2306
95 % 17 21 2589
90 % 17 21 2631
70 % 20 24 2187
50 % 205 209 137
40 % 208 212 152
30 % 211 215 168
Entity #2 | Chains: B
Elongation Factor G protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68684
95 % 1 1 47869
90 % 1 1 45546
70 % 1 1 40140
50 % 1 1 34382
40 % 1 1 30323
30 % 1 1 25689
Entity #3 | Chains: C
Elongation Factor G protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66716
95 % 1 1 46289
90 % 1 1 44058
70 % 1 1 38913
50 % 1 1 33324
40 % 1 1 29358
30 % 1 1 24762

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.