1JQS

Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog


Sequence Similarity Clusters for the Entities in PDB 1JQS

Entity #1 | Chains: A
50S Ribosomal protein L11 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 19 2590
95 % 17 21 2878
90 % 17 21 2919
70 % 20 24 2425
50 % 225 229 146
40 % 228 232 155
30 % 231 235 166
Entity #2 | Chains: B
Elongation Factor G protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74678
95 % 1 1 52083
90 % 1 1 49397
70 % 1 1 43241
50 % 1 1 36875
40 % 1 1 32495
30 % 1 1 27547
Entity #3 | Chains: C
Elongation Factor G protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72595
95 % 1 1 50411
90 % 1 1 47817
70 % 1 1 41937
50 % 1 1 35753
40 % 1 1 31478
30 % 1 1 26566

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures