Sequence Similarity Clusters for the Entities in PDB 1JQM

Entity #1 | Chains: A
50S Ribosomal protein L11 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2641
95 % 16 21 2929
90 % 16 21 2967
70 % 19 24 2485
50 % 227 232 147
40 % 230 235 158
30 % 233 238 166
Entity #2 | Chains: B
Elongation Factor G protein, length: 691 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25619
95 % 35 35 1086
90 % 36 36 1092
70 % 36 36 1128
50 % 49 49 779
40 % 49 49 817
30 % 51 51 786

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures