Sequence Similarity Clusters for the Entities in PDB 1JQL

Entity #1 | Chains: A
DNA Polymerase III, BETA CHAIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26551
95 % 42 49 388 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 42 49 418
70 % 42 49 458
50 % 45 52 438
40 % 46 54 396
30 % 51 59 358
Entity #2 | Chains: B
DNA Polymerase III, DELTA SUBUNIT protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67070
95 % 1 1 46200
90 % 1 1 43785
70 % 1 1 38432
50 % 1 1 32691
40 % 1 1 28849
30 % 1 1 24450

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures