Sequence Similarity Clusters for the Entities in PDB 1JQL

Entity #1 | Chains: A
DNA Polymerase III, BETA CHAIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27253
95 % 42 49 415 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 42 49 453
70 % 42 49 487
50 % 45 52 454
40 % 48 56 415
30 % 62 72 305
Entity #2 | Chains: B
DNA Polymerase III, DELTA SUBUNIT protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53637
95 % 1 1 44152
90 % 1 1 42008
70 % 1 1 37023
50 % 1 1 31410
40 % 1 1 27515
30 % 1 1 22971

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures