Sequence Similarity Clusters for the Entities in PDB 1JQL

Entity #1 | Chains: A
DNA Polymerase III, BETA CHAIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25947
95 % 42 48 376 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 42 48 402
70 % 42 48 440
50 % 45 51 437
40 % 46 52 458
30 % 51 57 415
Entity #2 | Chains: B
DNA Polymerase III, DELTA SUBUNIT protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65771
95 % 1 1 45374
90 % 1 1 43043
70 % 1 1 37808
50 % 1 1 32187
40 % 1 1 28414
30 % 1 1 24097

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.