Sequence Similarity Clusters for the Entities in PDB 1JQL

Entity #1 | Chains: A
DNA Polymerase III, BETA CHAIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26907
95 % 42 49 407 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 42 49 442
70 % 42 49 472
50 % 45 52 441
40 % 47 55 406
30 % 52 60 367
Entity #2 | Chains: B
DNA Polymerase III, DELTA SUBUNIT protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67841
95 % 1 1 46709
90 % 1 1 44249
70 % 1 1 38827
50 % 1 1 33025
40 % 1 1 29144
30 % 1 1 24700

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures