Sequence Similarity Clusters for the Entities in PDB 1JQL

Entity #1 | Chains: A
DNA Polymerase III, BETA CHAIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24936
95 % 42 47 374 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.9
PDBFlex
90 % 42 47 401
70 % 42 47 443
50 % 44 49 439
40 % 44 49 478
30 % 44 49 474
Entity #2 | Chains: B
DNA Polymerase III, DELTA SUBUNIT protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63431
95 % 1 1 43698
90 % 1 1 41517
70 % 1 1 36577
50 % 1 1 31216
40 % 1 1 27574
30 % 1 1 23369

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.