Sequence Similarity Clusters for the Entities in PDB 1JQJ

Entity #1 | Chains: A,B
DNA polymerase III, beta chain protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26510
95 % 45 49 386 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 45 49 416
70 % 45 49 456
50 % 48 52 437
40 % 50 54 395
30 % 55 59 358
Entity #2 | Chains: C,D
DNA polymerase III, delta subunit protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 3336
95 % 3 8 4098 Flexibility: Medium
Max RMSD: 14.8, Avg RMSD: 5.8
PDBFlex
90 % 3 8 4135
70 % 3 8 4076
50 % 3 8 3939
40 % 3 8 3774
30 % 3 8 3519

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures