Sequence Similarity Clusters for the Entities in PDB 1JQJ

Entity #1 | Chains: A,B
DNA polymerase III, beta chain protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26907
95 % 45 49 407 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 45 49 442
70 % 45 49 472
50 % 48 52 441
40 % 51 55 406
30 % 56 60 367
Entity #2 | Chains: C,D
DNA polymerase III, delta subunit protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 3389
95 % 3 8 4167 Flexibility: Medium
Max RMSD: 14.8, Avg RMSD: 5.8
PDBFlex
90 % 3 8 4210
70 % 3 8 4143
50 % 3 8 4002
40 % 3 8 3826
30 % 3 8 3569

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures