Sequence Similarity Clusters for the Entities in PDB 1JQJ

Entity #1 | Chains: A,B
DNA polymerase III, beta chain protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27202
95 % 45 49 415 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 45 49 453
70 % 45 49 487
50 % 48 52 452
40 % 52 56 415
30 % 68 72 304
Entity #2 | Chains: C,D
DNA polymerase III, delta subunit protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 3668
95 % 3 8 4037 Flexibility: Medium
Max RMSD: 14.8, Avg RMSD: 5.8
PDBFlex
90 % 3 8 4091
70 % 3 8 4018
50 % 3 8 3911
40 % 3 8 3717
30 % 3 8 3406

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures