Sequence Similarity Clusters for the Entities in PDB 1JQJ

Entity #1 | Chains: A,B
DNA polymerase III, beta chain protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25749
95 % 43 47 388 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 43 47 418
70 % 43 47 459
50 % 45 49 449
40 % 46 50 484
30 % 51 55 439
Entity #2 | Chains: C,D
DNA polymerase III, delta subunit protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 3213
95 % 3 8 3973 Flexibility: Medium
Max RMSD: 14.8, Avg RMSD: 6.2
PDBFlex
90 % 3 8 4011
70 % 3 8 3964
50 % 3 8 3846
40 % 3 8 3684
30 % 3 8 3436

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.