Sequence Similarity Clusters for the Entities in PDB 1JQ0

Entity #1 | Chains: A
gp41 envelope protein protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71960
95 % 1 1 49762
90 % 1 2 20364
70 % 1 2 18707
50 % 1 5 9298
40 % 2 12 2179
30 % 2 12 2080

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures