Sequence Similarity Clusters for the Entities in PDB 1JQ0

Entity #1 | Chains: A
gp41 envelope protein protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48631
95 % 1 1 38822
90 % 1 2 15706
70 % 1 2 14674
50 % 2 12 2187
40 % 2 12 2176
30 % 4 29 960

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures