Sequence Similarity Clusters for the Entities in PDB 1JPX

Entity #1 | Chains: A,D,G
gp41 envelope protein protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28567
95 % 1 1 25018 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 16095
70 % 2 2 15020
50 % 5 12 2252
40 % 5 12 2234
30 % 20 29 985

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QBZ 1 A, B, C PROTEIN (SIV GP41 ECTODOMAIN) SIV GP41 ECTODOMAIN 27-149 11723
2 1JQ0 1 A gp41 envelope protein N40(L6)C38 11723
3 3CP1 1 A Transmembrane Protein Fusion protein of UNP residues 536-579, Linker, and UNP residues 628-663 11676
4 3CYO 1 A Transmembrane protein FUSION PROTEIN OF UNP RESIDUES 536-579, LINKER, AND UNP RESIDUES 628-663 11676
5 1JPX 1 A, D, G gp41 envelope protein N40(L6)C38 11723
6 3P30 1 A HIV-1 gp41 11676
7 1QCE 1 A, B, C PROTEIN (GP41) ECTODOMAIN, RESIDUES 27 - 149, NUMBERED 1 - 123 11723
8 2EZO 1 A, B, C GP41 ECTODOMAIN, RESIDUES 27 - 149, NUMBERED 1 - 123 11723
9 2EZP 1 A, B, C GP41 ECTODOMAIN, RESIDUES 27 - 149, NUMBERED 1 - 123 11723
10 2EZQ 1 A, B, C GP41 ECTODOMAIN, RESIDUES 27 - 149, NUMBERED 1 - 123 11723
11 2EZR 1 A, B, C GP41 ECTODOMAIN, RESIDUES 27 - 149, NUMBERED 1 - 123 11723
12 2EZS 1 A, B, C GP41 ECTODOMAIN, RESIDUES 27 - 149, NUMBERED 1 - 123 11723