Sequence Similarity Clusters for the Entities in PDB 1JPX

Entity #1 | Chains: A,D,G
gp41 envelope protein protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30791
95 % 1 1 25470 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20754
70 % 2 2 19050
50 % 4 5 9497
40 % 5 12 2231
30 % 5 12 2127

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures