Sequence Similarity Clusters for the Entities in PDB 1JPX

Entity #1 | Chains: A,D,G
gp41 envelope protein protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28807
95 % 1 1 23865 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 19437
70 % 2 2 17911
50 % 4 5 8892
40 % 5 12 2069
30 % 5 12 1989

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.