Sequence Similarity Clusters for the Entities in PDB 1JPX

Entity #1 | Chains: A,D,G
gp41 envelope protein protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30423
95 % 1 1 25169 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20500
70 % 2 2 18827
50 % 4 5 9367
40 % 5 12 2206
30 % 5 12 2106

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures