Sequence Similarity Clusters for the Entities in PDB 1JPW

Entity #1 | Chains: A,B,C
BETA-CATENIN protein, length: 540 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 24 1272
95 % 22 24 1723 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 22 24 1764
70 % 23 25 1641
50 % 23 25 1688
40 % 23 25 1701
30 % 26 28 1432
Entity #2 | Chains: D,E,F
transcription factor 7-like 2 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31116
95 % 2 2 15657 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.7
PDBFlex
90 % 2 2 15370
70 % 2 2 14401
50 % 4 4 9540
40 % 4 4 8725
30 % 4 4 7671

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures