Sequence Similarity Clusters for the Entities in PDB 1JPW

Entity #1 | Chains: A,B,C
BETA-CATENIN protein, length: 540 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 24 1220
95 % 22 24 1639 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 22 24 1676
70 % 23 25 1577
50 % 23 25 1617
40 % 23 25 1637
30 % 26 28 1384
Entity #2 | Chains: D,E,F
transcription factor 7-like 2 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30071
95 % 2 2 15132 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.7
PDBFlex
90 % 2 2 14851
70 % 2 2 13918
50 % 4 4 9210
40 % 4 4 8430
30 % 4 4 7422

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.