Sequence Similarity Clusters for the Entities in PDB 1JPW

Entity #1 | Chains: A,B,C
BETA-CATENIN protein, length: 540 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 24 1169
95 % 22 24 1587 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.4
PDBFlex
90 % 22 24 1623
70 % 23 25 1523
50 % 23 25 1558
40 % 23 25 1584
30 % 26 28 1353
Entity #2 | Chains: D,E,F
transcription factor 7-like 2 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29125
95 % 2 2 14665 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.7
PDBFlex
90 % 2 2 14387
70 % 2 2 13481
50 % 4 4 8937
40 % 4 4 8185
30 % 4 4 7198

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.