Sequence Similarity Clusters for the Entities in PDB 1JPT

Entity #1 | Chains: L
immunoglobulin Fab D3h44, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 20508
95 % 1 4 13903 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.9
PDBFlex
90 % 68 676 3
70 % 202 1828 2
50 % 496 4501 1
40 % 496 4501 1
30 % 535 5303 1
Entity #2 | Chains: H
immunoglobulin Fab D3H44, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 20142
95 % 1 3 17577 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 3.7
PDBFlex
90 % 1 3 17205
70 % 242 2178 1
50 % 497 4501 1
40 % 497 4501 1
30 % 536 5303 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.