Sequence Similarity Clusters for the Entities in PDB 1JPT

Entity #1 | Chains: L
immunoglobulin Fab D3h44, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 22180
95 % 2 5 12906 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.9
PDBFlex
90 % 93 791 2
70 % 283 2479 1
50 % 583 5021 1
40 % 583 5021 1
30 % 662 5951 1
Entity #2 | Chains: H
immunoglobulin Fab D3H44, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21774
95 % 1 3 18910 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 3.7
PDBFlex
90 % 1 3 18495
70 % 284 2429 2
50 % 584 5021 1
40 % 584 5021 1
30 % 663 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures