Sequence Similarity Clusters for the Entities in PDB 1JPT

Entity #1 | Chains: L
immunoglobulin Fab D3h44, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21636
95 % 2 5 12603 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.9
PDBFlex
90 % 81 746 3
70 % 262 2392 1
50 % 540 4843 1
40 % 540 4843 1
30 % 584 5705 1
Entity #2 | Chains: H
immunoglobulin Fab D3H44, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21249
95 % 1 3 18496 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 3.7
PDBFlex
90 % 1 3 18105
70 % 263 2342 2
50 % 541 4843 1
40 % 541 4843 1
30 % 585 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures