Sequence Similarity Clusters for the Entities in PDB 1JPS

Entity #1 | Chains: L
immunoglobulin Fab D3H44, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21123
95 % 2 4 14299 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.9
PDBFlex
90 % 91 701 3
70 % 322 2287 1
50 % 659 4633 1
40 % 659 4633 1
30 % 718 5461 1
Entity #2 | Chains: H
immunoglobulin Fab D3H44, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 20753
95 % 2 3 18110 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 3.7
PDBFlex
90 % 2 3 17723
70 % 322 2244 2
50 % 660 4633 1
40 % 660 4633 1
30 % 719 5461 1
Entity #3 | Chains: T
tissue factor protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 39 932
95 % 8 40 1228 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 8 40 1258
70 % 8 41 1231
50 % 8 41 1285
40 % 8 41 1300
30 % 8 41 1276

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.