Sequence Similarity Clusters for the Entities in PDB 1JPS

Entity #1 | Chains: L
immunoglobulin Fab D3H44, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 19631
95 % 2 4 13339
90 % 80 624 3
70 % 241 1729 2
50 % 595 4220 1
40 % 595 4221 1
30 % 641 4972 1
Entity #2 | Chains: H
immunoglobulin Fab D3H44, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 19282
95 % 2 3 16847
90 % 2 3 16503
70 % 290 2041 1
50 % 596 4220 1
40 % 596 4221 1
30 % 642 4972 1
Entity #3 | Chains: T
tissue factor protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 38 893
95 % 8 39 1183
90 % 8 39 1207
70 % 8 40 1182
50 % 8 40 1225
40 % 8 40 1241
30 % 8 40 1210

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.