Sequence Similarity Clusters for the Entities in PDB 1JPS

Entity #1 | Chains: L
immunoglobulin Fab D3H44, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21360
95 % 3 5 12478 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.9
PDBFlex
90 % 98 724 3
70 % 335 2346 1
50 % 685 4752 1
40 % 685 4752 1
30 % 744 5606 1
Entity #2 | Chains: H
immunoglobulin Fab D3H44, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 20986
95 % 2 3 18292 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 3.7
PDBFlex
90 % 2 3 17907
70 % 334 2299 2
50 % 686 4752 1
40 % 686 4752 1
30 % 745 5606 1
Entity #3 | Chains: T
tissue factor protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 39 955
95 % 8 40 1246 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 8 40 1276
70 % 8 41 1247
50 % 8 41 1304
40 % 8 41 1315
30 % 8 41 1287

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.