Sequence Similarity Clusters for the Entities in PDB 1JPS

Entity #1 | Chains: L
immunoglobulin Fab D3H44, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 23410
95 % 3 5 14245 Flexibility: Medium
Max RMSD: 5.2, Avg RMSD: 3.0
PDBFlex
90 % 127 780 2
70 % 375 2553 1
50 % 769 5180 1
40 % 937 5834 1
30 % 1155 7269 1
Entity #2 | Chains: H
immunoglobulin Fab D3H44, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 20786
95 % 2 3 20088 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 3.7
PDBFlex
90 % 2 3 19522
70 % 375 2511 2
50 % 770 5180 1
40 % 938 5834 1
30 % 1156 7269 1
Entity #3 | Chains: T
tissue factor protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 39 1142
95 % 8 40 1332 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 8 40 1356
70 % 8 41 1309
50 % 8 41 1360
40 % 8 41 1353
30 % 8 41 1344

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures