Sequence Similarity Clusters for the Entities in PDB 1JPN

Entity #1 | Chains: A,B
SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 14 2081
95 % 6 19 1970 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.6
PDBFlex
90 % 6 19 2016
70 % 6 19 2037
50 % 6 19 2047
40 % 6 21 1771
30 % 12 51 664

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures