Sequence Similarity Clusters for the Entities in PDB 1JPM

Entity #1 | Chains: A,B,C,D
L-Ala-D/L-Glu Epimerase protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 6123
95 % 2 2 6233 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 2 2 6227
70 % 2 2 6066
50 % 2 2 5682
40 % 7 7 1167
30 % 208 262 27

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures