Sequence Similarity Clusters for the Entities in PDB 1JPM

Entity #1 | Chains: A,B,C,D
L-Ala-D/L-Glu Epimerase protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 5355
95 % 2 2 6241 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 2 2 6274
70 % 2 2 6131
50 % 2 2 5941
40 % 7 7 1291
30 % 17 27 449

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures