Sequence Similarity Clusters for the Entities in PDB 1JPL

Entity #1 | Chains: A,B,C,D
ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA3 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 5016
95 % 3 3 5687 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 3 3 5683
70 % 10 13 1650
50 % 11 14 1584
40 % 11 14 1609
30 % 11 14 1575
Entity #2 | Chains: E,F,G,H
Cation-Independent Mannose 6-phosphate receptor protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.