Sequence Similarity Clusters for the Entities in PDB 1JPJ

Entity #1 | Chains: A
SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 4496
95 % 15 19 2163 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.6
PDBFlex
90 % 15 19 2216
70 % 15 19 2229
50 % 15 19 2236
40 % 15 21 1900
30 % 41 58 611

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LS1 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
2 2J45 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN G DOMAIN, RESIDUES 1-296 271
3 2J46 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN G DOMAIN, RESIDUES 1-296 271
4 2C04 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-296 271
5 2C03 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-296 271
6 1JPN 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
7 1OKK 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG DOMAIN, RESIDUES 0-293 271
8 2J7P 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-293 271
9 1NG1 1 A SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
10 1FFH 1 A FFH THE NG FRAGMENT WAS GENERATED BY PROTEOLYSIS 'NG' GTPASE FRAGMENT OF FFH 271
11 2NG1 1 A SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
12 1RJ9 2 B Signal recognition particle protein NG domain (Residues 1-300) 271
13 1O87 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG GTPASE DOMAIN, RESIDUES 1-296 271
14 3NG1 1 A, B SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
15 1JPJ 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
16 2CNW 1 A, B, C SIGNAL RECOGNITION PARTICLE PROTEIN GDP, ALF4, GMP NG DOMAIN RESIDUES 1-293 271
17 3ZN8 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 2-295 562 3.6.5.4 | Details
18 2XKV 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG DOMAIN, RESIDUES 1-294 562 3.6.5.4 | Details
19 1RY1 12 U SRP54NG 9612