Sequence Similarity Clusters for the Entities in PDB 1JPJ

Entity #1 | Chains: A
SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 4496
95 % 15 19 2163 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.6
PDBFlex
90 % 15 19 2216
70 % 15 19 2229
50 % 15 19 2236
40 % 15 21 1900
30 % 41 58 611

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LS1 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
2 2J45 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN G DOMAIN, RESIDUES 1-296 271
3 2J46 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN G DOMAIN, RESIDUES 1-296 271
4 2C04 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-296 271
5 2C03 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-296 271
6 6CQP 1 A, B Signal recognition particle receptor FtsY 562
7 6CY5 1 A, B Signal recognition particle receptor FtsY 1117645
8 1VMA 1 A, B cell division protein FtsY 2336
9 6CS8 1 A, B Signal recognition particle receptor FtsY 562
10 6CVD 1 A, B Signal recognition particle receptor FtsY 562
11 6CY1 1 A, B Signal recognition particle receptor FtsY 1117645
12 5L3S 1 A, C, E, G Signal recognition particle 54 kDa protein 2287
13 5L3S 2 B, D, F, H Signal recognition particle receptor FtsY 2285
14 3B9Q 1 A Chloroplast SRP receptor homolog, alpha subunit CPFTSY residues 65-366 3702
15 4AK9 1 A, B CPFTSY RESIDUES 80-383 3218
16 2QY9 1 A Cell division protein ftsY NG domain residues 196-497 562
17 1JPN 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
18 6DLX 1 A, B Signal recognition particle receptor FtsY 562
19 1OKK 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG DOMAIN, RESIDUES 0-293 271
20 1OKK 2 D CELL DIVISION PROTEIN FTSY NG DOMAIN, RESIDUES 2-304 271
21 2J7P 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-293 271
22 2J7P 2 D, E CELL DIVISION PROTEIN FTSY NG, RESIDUES 21-303 271
23 1NG1 1 A SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
24 1FFH 1 A FFH THE NG FRAGMENT WAS GENERATED BY PROTEOLYSIS 'NG' GTPASE FRAGMENT OF FFH 271
25 1ZU4 1 A ftsY NG domain 2102
26 6FQD 1 A, B Signal recognition particle receptor FtsY 562
27 2NG1 1 A SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
28 1RJ9 1 A Signal Recognition Protein 271
29 1RJ9 2 B Signal recognition particle protein NG domain (Residues 1-300) 271
30 1J8M 1 F SIGNAL RECOGNITION 54 KDA PROTEIN G-DOMAIN, GTPASE DOMAIN 2283
31 1O87 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG GTPASE DOMAIN, RESIDUES 1-296 271
32 3E70 1 C Signal recognition particle receptor 2261
33 1J8Y 1 F SIGNAL RECOGNITION 54 KDA PROTEIN G-DOMAIN, GTPASE DOMAIN 2283
34 2IYL 1 D CELL DIVISION PROTEIN FTSY NGD20, RESIDUES 20-303 271
35 3DMD 1 A, B, C Signal recognition particle receptor 2261
36 5L3V 1 A, B Signal recognition particle 54 kDa protein 2287
37 2Q9C 1 A, B Cell division protein ftsY 271
38 3DM9 1 B Signal recognition particle receptor 2261
39 5L3W 1 A Signal recognition particle receptor FtsY NG domain, UNP residues 69-368 2285
40 3NG1 1 A, B SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
41 1JPJ 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
42 1FTS 1 A FTSY NG-DOMAIN RESIDUES 197 - 497 562
43 2CNW 1 A, B, C SIGNAL RECOGNITION PARTICLE PROTEIN GDP, ALF4, GMP NG DOMAIN RESIDUES 1-293 271
44 2CNW 2 D, E, F CELL DIVISION PROTEIN FTSY GDP, ALF4, GMP RESIDUES 20-303 271
45 2Q9B 1 A, B Cell division protein ftsY 271
46 5L3R 1 A, C Signal recognition particle 54 kDa protein, chloroplastic 3702
47 5L3R 2 B, D Cell division protein FtsY homolog, chloroplastic 3702
48 2Q9A 1 A, B Cell division protein ftsY 271
49 4C7O 1 A, C SIGNAL RECOGNITION PARTICLE PROTEIN RESIDUES 1-296 562
50 4C7O 2 B, D SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY NG DOMAIN, RESIDUES 224-497 562
51 1ZU5 1 A, B ftsY NG domain 2102
52 2XXA 2 B, D SRP RECEPTOR FTSY RESIDUES 196-497 562
53 5NCO 40 l Signal recognition particle receptor FtsY 562
54 3ZN8 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 2-295 562 3.6.5.4 | Details
55 3ZN8 2 D SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY NG, RESIDUES 201-495 562 3.6.5.4 | Details
56 2XKV 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG DOMAIN, RESIDUES 1-294 562 3.6.5.4 | Details
57 2XKV 4 D CELL DIVISION PROTEIN FTSY 562
58 1RY1 12 U SRP54NG 9612