Sequence Similarity Clusters for the Entities in PDB 1JPJ

Entity #1 | Chains: A
SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 4377
95 % 15 19 2104 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.6
PDBFlex
90 % 15 19 2156
70 % 15 19 2165
50 % 15 19 2173
40 % 15 21 1851
30 % 37 54 646

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LS1 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
2 2J45 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN G DOMAIN, RESIDUES 1-296 271
3 2J46 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN G DOMAIN, RESIDUES 1-296 271
4 2C04 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-296 271
5 2C03 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-296 271
6 6CY5 1 A, B Signal recognition particle receptor FtsY 1117645
7 1VMA 1 A, B cell division protein FtsY 2336
8 6CY1 1 A, B Signal recognition particle receptor FtsY 1117645
9 5L3S 1 A, C, E, G Signal recognition particle 54 kDa protein 2287
10 5L3S 2 B, D, F, H Signal recognition particle receptor FtsY 2285
11 3B9Q 1 A Chloroplast SRP receptor homolog, alpha subunit CPFTSY residues 65-366 3702
12 4AK9 1 A, B CPFTSY RESIDUES 80-383 3218
13 2QY9 1 A Cell division protein ftsY NG domain residues 196-497 562
14 1JPN 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
15 1OKK 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG DOMAIN, RESIDUES 0-293 271
16 1OKK 2 D CELL DIVISION PROTEIN FTSY NG DOMAIN, RESIDUES 2-304 271
17 2J7P 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-293 271
18 2J7P 2 D, E CELL DIVISION PROTEIN FTSY NG, RESIDUES 21-303 271
19 1NG1 1 A SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
20 1FFH 1 A FFH THE NG FRAGMENT WAS GENERATED BY PROTEOLYSIS 'NG' GTPASE FRAGMENT OF FFH 271
21 1ZU4 1 A ftsY NG domain 2102
22 6FQD 1 A, B Signal recognition particle receptor FtsY 562
23 2NG1 1 A SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
24 1RJ9 1 A Signal Recognition Protein 271
25 1RJ9 2 B Signal recognition particle protein NG domain (Residues 1-300) 271
26 1J8M 1 F SIGNAL RECOGNITION 54 KDA PROTEIN G-DOMAIN, GTPASE DOMAIN 2283
27 1O87 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG GTPASE DOMAIN, RESIDUES 1-296 271
28 3E70 1 C Signal recognition particle receptor 2261
29 1J8Y 1 F SIGNAL RECOGNITION 54 KDA PROTEIN G-DOMAIN, GTPASE DOMAIN 2283
30 2IYL 1 D CELL DIVISION PROTEIN FTSY NGD20, RESIDUES 20-303 271
31 3DMD 1 A, B, C Signal recognition particle receptor 2261
32 5L3V 1 A, B Signal recognition particle 54 kDa protein 2287
33 2Q9C 1 A, B Cell division protein ftsY 271
34 3DM9 1 B Signal recognition particle receptor 2261
35 5L3W 1 A Signal recognition particle receptor FtsY NG domain, UNP residues 69-368 2285
36 3NG1 1 A, B SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
37 1JPJ 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
38 1FTS 1 A FTSY NG-DOMAIN RESIDUES 197 - 497 562
39 2CNW 1 A, B, C SIGNAL RECOGNITION PARTICLE PROTEIN GDP, ALF4, GMP NG DOMAIN RESIDUES 1-293 271
40 2CNW 2 D, E, F CELL DIVISION PROTEIN FTSY GDP, ALF4, GMP RESIDUES 20-303 271
41 2Q9B 1 A, B Cell division protein ftsY 271
42 5L3R 1 A, C Signal recognition particle 54 kDa protein, chloroplastic 3702
43 5L3R 2 B, D Cell division protein FtsY homolog, chloroplastic 3702
44 2Q9A 1 A, B Cell division protein ftsY 271
45 4C7O 1 A, C SIGNAL RECOGNITION PARTICLE PROTEIN RESIDUES 1-296 562
46 4C7O 2 B, D SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY NG DOMAIN, RESIDUES 224-497 562
47 1ZU5 1 A, B ftsY NG domain 2102
48 2XXA 2 B, D SRP RECEPTOR FTSY RESIDUES 196-497 562
49 5NCO 40 l Signal recognition particle receptor FtsY 562
50 3ZN8 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 2-295 562 3.6.5.4 | Details
51 3ZN8 2 D SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY NG, RESIDUES 201-495 562 3.6.5.4 | Details
52 2XKV 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG DOMAIN, RESIDUES 1-294 562 3.6.5.4 | Details
53 2XKV 4 D CELL DIVISION PROTEIN FTSY 562
54 1RY1 12 U SRP54NG 9612