Sequence Similarity Clusters for the Entities in PDB 1JPJ

Entity #1 | Chains: A
SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 4643
95 % 15 19 2235 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.6
PDBFlex
90 % 15 19 2296
70 % 15 19 2287
50 % 15 19 2286
40 % 15 21 1948
30 % 42 59 618

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LS1 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
2 2J45 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN G DOMAIN, RESIDUES 1-296 271
3 2J46 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN G DOMAIN, RESIDUES 1-296 271
4 2C04 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-296 271
5 2C03 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-296 271
6 6CQP 1 A, B Signal recognition particle receptor FtsY 562
7 6CY5 1 A, B Signal recognition particle receptor FtsY 1117645
8 5NIY 1 A Signal recognition particle-docking protein FtsY 562
9 1VMA 1 A, B cell division protein FtsY 2336
10 6CS8 1 A, B Signal recognition particle receptor FtsY 562
11 6CVD 1 A, B Signal recognition particle receptor FtsY 562
12 6CY1 1 A, B Signal recognition particle receptor FtsY 1117645
13 5L3S 1 A, C, E, G Signal recognition particle 54 kDa protein 2287
14 5L3S 2 B, D, F, H Signal recognition particle receptor FtsY 2285
15 3B9Q 1 A Chloroplast SRP receptor homolog, alpha subunit CPFTSY residues 65-366 3702
16 4AK9 1 A, B CPFTSY RESIDUES 80-383 3218
17 2QY9 1 A Cell division protein ftsY NG domain residues 196-497 562
18 1JPN 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
19 6DLX 1 A, B Signal recognition particle receptor FtsY 562
20 1OKK 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG DOMAIN, RESIDUES 0-293 271
21 1OKK 2 D CELL DIVISION PROTEIN FTSY NG DOMAIN, RESIDUES 2-304 271
22 2J7P 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-293 271
23 2J7P 2 D, E CELL DIVISION PROTEIN FTSY NG, RESIDUES 21-303 271
24 1NG1 1 A SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
25 1FFH 1 A FFH THE NG FRAGMENT WAS GENERATED BY PROTEOLYSIS 'NG' GTPASE FRAGMENT OF FFH 271
26 1ZU4 1 A ftsY NG domain 2102
27 6FQD 1 A, B Signal recognition particle receptor FtsY 562
28 2NG1 1 A SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
29 1RJ9 1 A Signal Recognition Protein 271
30 1RJ9 2 B Signal recognition particle protein NG domain (Residues 1-300) 271
31 1J8M 1 F SIGNAL RECOGNITION 54 KDA PROTEIN G-DOMAIN, GTPASE DOMAIN 2283
32 1O87 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG GTPASE DOMAIN, RESIDUES 1-296 271
33 3E70 1 C Signal recognition particle receptor 2261
34 1J8Y 1 F SIGNAL RECOGNITION 54 KDA PROTEIN G-DOMAIN, GTPASE DOMAIN 2283
35 2IYL 1 D CELL DIVISION PROTEIN FTSY NGD20, RESIDUES 20-303 271
36 3DMD 1 A, B, C Signal recognition particle receptor 2261
37 5L3V 1 A, B Signal recognition particle 54 kDa protein 2287
38 2Q9C 1 A, B Cell division protein ftsY 271
39 3DM9 1 B Signal recognition particle receptor 2261
40 5L3W 1 A Signal recognition particle receptor FtsY NG domain, UNP residues 69-368 2285
41 3NG1 1 A, B SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
42 1JPJ 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
43 1FTS 1 A FTSY NG-DOMAIN RESIDUES 197 - 497 562
44 2CNW 1 A, B, C SIGNAL RECOGNITION PARTICLE PROTEIN GDP, ALF4, GMP NG DOMAIN RESIDUES 1-293 271
45 2CNW 2 D, E, F CELL DIVISION PROTEIN FTSY GDP, ALF4, GMP RESIDUES 20-303 271
46 2Q9B 1 A, B Cell division protein ftsY 271
47 5L3R 1 A, C Signal recognition particle 54 kDa protein, chloroplastic 3702
48 5L3R 2 B, D Cell division protein FtsY homolog, chloroplastic 3702
49 2Q9A 1 A, B Cell division protein ftsY 271
50 4C7O 1 A, C SIGNAL RECOGNITION PARTICLE PROTEIN RESIDUES 1-296 562
51 4C7O 2 B, D SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY NG DOMAIN, RESIDUES 224-497 562
52 1ZU5 1 A, B ftsY NG domain 2102
53 2XXA 2 B, D SRP RECEPTOR FTSY RESIDUES 196-497 562
54 5NCO 40 l Signal recognition particle receptor FtsY 562
55 3ZN8 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 2-295 562 3.6.5.4 | Details
56 3ZN8 2 D SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY NG, RESIDUES 201-495 562 3.6.5.4 | Details
57 2XKV 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG DOMAIN, RESIDUES 1-294 562 3.6.5.4 | Details
58 2XKV 4 D CELL DIVISION PROTEIN FTSY 562
59 1RY1 12 U SRP54NG 9612