Sequence Similarity Clusters for the Entities in PDB 1JPJ

Entity #1 | Chains: A
SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 4444
95 % 15 19 2144 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.6
PDBFlex
90 % 15 19 2194
70 % 15 19 2205
50 % 15 19 2211
40 % 15 21 1880
30 % 37 54 665

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures