Sequence Similarity Clusters for the Entities in PDB 1JPG

Entity #1 | Chains: A
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 55 201
95 % 20 59 261
90 % 21 61 265
70 % 409 668 7
50 % 410 673 7
40 % 440 723 10
30 % 474 840 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 133 95
95 % 94 215 64
90 % 94 215 68
70 % 498 861 5
50 % 510 883 5
40 % 510 883 9
30 % 510 883 14
Entity #3 | Chains: C
LCMV peptidic epitope np396 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.