Sequence Similarity Clusters for the Entities in PDB 1JPG

Entity #1 | Chains: A
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 61 196
95 % 23 65 254 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 24 67 260
70 % 430 719 6
50 % 431 724 6
40 % 462 775 10
30 % 502 899 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 64 135 96
95 % 101 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 101 228 65
70 % 523 916 4
50 % 535 938 3
40 % 535 938 7
30 % 535 938 12
Entity #3 | Chains: C
LCMV peptidic epitope np396 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures