Sequence Similarity Clusters for the Entities in PDB 1JPF

Entity #1 | Chains: A
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 46 250
95 % 13 50 334
90 % 13 52 349
70 % 366 657 7
50 % 367 662 7
40 % 387 710 11
30 % 413 827 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 131 95
95 % 73 213 66
90 % 73 213 70
70 % 441 857 5
50 % 447 877 4
40 % 447 877 9
30 % 447 877 14
Entity #3 | Chains: C
LCMV peptidic epitope gp276 protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.