Sequence Similarity Clusters for the Entities in PDB 1JPF

Entity #1 | Chains: A
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 55 207
95 % 15 59 269
90 % 15 61 276
70 % 377 692 6
50 % 378 697 6
40 % 401 748 10
30 % 429 868 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 133 95
95 % 75 217 64
90 % 75 217 68
70 % 452 885 4
50 % 460 907 3
40 % 460 907 9
30 % 460 907 14
Entity #3 | Chains: C
LCMV peptidic epitope gp276 protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.