Sequence Similarity Clusters for the Entities in PDB 1JP5

Entity #1 | Chains: A,B
single-chain Fv fragment 1696 protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19434
95 % 2 2 17085
90 % 2 2 16738
70 % 3 3 10834
50 % 21 27 1098
40 % 21 29 1047
30 % 3572 5225 1
Entity #2 | Chains: C,D
epitope peptide corresponding to N-terminus of HIV-1 protease protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.