Sequence Similarity Clusters for the Entities in PDB 1JP5

Entity #1 | Chains: A,B
single-chain Fv fragment 1696 protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19894
95 % 2 2 17466 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 2 17102
70 % 3 3 11092
50 % 21 33 859
40 % 21 33 889
30 % 3646 5392 1
Entity #2 | Chains: C,D
epitope peptide corresponding to N-terminus of HIV-1 protease protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.