Sequence Similarity Clusters for the Entities in PDB 1JP5

Entity #1 | Chains: A,B
single-chain Fv fragment 1696 protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21223
95 % 2 2 18554 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 2 18166
70 % 3 3 11778
50 % 24 37 796
40 % 24 37 830
30 % 4050 5941 1
Entity #2 | Chains: C,D
epitope peptide corresponding to N-terminus of HIV-1 protease protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures