Sequence Similarity Clusters for the Entities in PDB 1JOW

Entity #1 | Chains: A
CYCLIN HOMOLOG protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 13085
95 % 6 6 12617 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 6 6 12437
70 % 6 6 11738
50 % 6 6 10495
40 % 6 6 9521
30 % 7 7 6578
Entity #2 | Chains: B
CELL DIVISION PROTEIN KINASE 6 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 16 2905
95 % 16 16 3614 Flexibility: Low
Max RMSD: 8.1, Avg RMSD: 2.6
PDBFlex
90 % 16 16 3675
70 % 20 25 2202
50 % 20 25 2192
40 % 456 465 50
30 % 3987 4073 2

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures