Sequence Similarity Clusters for the Entities in PDB 1JOW

Entity #1 | Chains: A
CYCLIN HOMOLOG protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 12889
95 % 6 6 12434 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 6 6 12259
70 % 6 6 11580
50 % 6 6 10360
40 % 6 6 9403
30 % 7 7 6498
Entity #2 | Chains: B
CELL DIVISION PROTEIN KINASE 6 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 16 2873
95 % 16 16 3577 Flexibility: Low
Max RMSD: 8.1, Avg RMSD: 2.6
PDBFlex
90 % 16 16 3628
70 % 20 25 2178
50 % 20 25 2165
40 % 453 462 49
30 % 3882 3966 2

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures