Sequence Similarity Clusters for the Entities in PDB 1JOU

Entity #1 | Chains: A,C,E
Thrombin, light chain protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 16 1990
95 % 6 16 2564 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 6 16 2611
70 % 6 25 1426
50 % 6 42 840
40 % 6 42 870
30 % 6 42 857
Entity #2 | Chains: B,D,F
Thrombin, heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 2411
95 % 160 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 160 381 38
70 % 160 405 43
50 % 160 405 78
40 % 922 1682 4
30 % 984 1831 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.