Sequence Similarity Clusters for the Entities in PDB 1JOU

Entity #1 | Chains: A,C,E
Thrombin, light chain protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 16 2385
95 % 6 16 2665 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 6 16 2730
70 % 6 25 1513
50 % 6 42 885
40 % 6 42 910
30 % 6 42 897
Entity #2 | Chains: B,D,F
Thrombin, heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 147 332 53
95 % 163 378 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 163 385 52
70 % 163 409 47
50 % 163 409 85
40 % 1010 1873 4
30 % 1016 1887 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures