Sequence Similarity Clusters for the Entities in PDB 1JOU

Entity #1 | Chains: A,C,E
Thrombin, light chain protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 16 2015
95 % 6 16 2595 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 6 16 2640
70 % 6 25 1443
50 % 6 42 847
40 % 6 42 878
30 % 6 42 864
Entity #2 | Chains: B,D,F
Thrombin, heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 2444
95 % 160 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 160 381 38
70 % 160 405 45
50 % 160 405 80
40 % 925 1685 4
30 % 987 1834 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.