Sequence Similarity Clusters for the Entities in PDB 1JOU

Entity #1 | Chains: A,C,E
Thrombin, light chain protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 16 2057
95 % 6 16 2641 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 6 16 2691
70 % 6 25 1463
50 % 6 42 857
40 % 6 42 887
30 % 6 42 872
Entity #2 | Chains: B,D,F
Thrombin, heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 2504
95 % 161 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 161 381 39
70 % 161 405 46
50 % 161 405 84
40 % 931 1698 4
30 % 993 1848 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures