Sequence Similarity Clusters for the Entities in PDB 1JOT

Entity #1 | Chains: A
AGGLUTININ protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 6594
95 % 2 4 6743 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 6728
70 % 26 36 389
50 % 33 49 277
40 % 33 49 309
30 % 63 93 215
Entity #2 | Chains: B
AGGLUTININ protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62243
95 % 1 1 50640
90 % 1 1 48049
70 % 1 1 42100
50 % 1 1 35721
40 % 1 1 31274
30 % 1 1 26136

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1JOT 2 B AGGLUTININ 3496