Sequence Similarity Clusters for the Entities in PDB 1JOT

Entity #1 | Chains: A
AGGLUTININ protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7137
95 % 2 4 7277 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 7233
70 % 26 36 412
50 % 33 49 337
40 % 42 66 263
30 % 80 111 212
Entity #2 | Chains: B
AGGLUTININ protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65866
95 % 1 1 53452
90 % 1 1 50635
70 % 1 1 44236
50 % 1 1 37520
40 % 1 1 32852
30 % 1 1 27438

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1JOT 2 B AGGLUTININ 3496