Sequence Similarity Clusters for the Entities in PDB 1JOT

Entity #1 | Chains: A
AGGLUTININ protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7042
95 % 2 4 7174 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 7136
70 % 26 36 400
50 % 33 49 322
40 % 42 66 256
30 % 80 111 207
Entity #2 | Chains: B
AGGLUTININ protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64955
95 % 1 1 52769
90 % 1 1 49983
70 % 1 1 43699
50 % 1 1 37067
40 % 1 1 32456
30 % 1 1 27154

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3LLZ 1 A Agglutinin alpha chain 3496
2 1JOT 1 A AGGLUTININ 3496
3 3LM1 1 A, C, E, G, I, K, M, O Agglutinin alpha chain 3496
4 3LLY 1 A Agglutinin alpha chain 3496