Sequence Similarity Clusters for the Entities in PDB 1JOT

Entity #1 | Chains: A
AGGLUTININ protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7205
95 % 2 4 7347 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 7302
70 % 26 36 433
50 % 33 49 344
40 % 42 66 267
30 % 80 111 214
Entity #2 | Chains: B
AGGLUTININ protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66282
95 % 1 1 53801
90 % 1 1 50979
70 % 1 1 44530
50 % 1 1 37751
40 % 1 1 33065
30 % 1 1 27622

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3LLZ 1 A Agglutinin alpha chain 3496
2 1JOT 1 A AGGLUTININ 3496
3 3LM1 1 A, C, E, G, I, K, M, O Agglutinin alpha chain 3496
4 3LLY 1 A Agglutinin alpha chain 3496