Sequence Similarity Clusters for the Entities in PDB 1JOT

Entity #1 | Chains: A
AGGLUTININ protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 6585
95 % 2 4 6732 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 6720
70 % 26 36 389
50 % 33 49 276
40 % 33 49 308
30 % 63 93 214
Entity #2 | Chains: B
AGGLUTININ protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62140
95 % 1 1 50554
90 % 1 1 47962
70 % 1 1 42033
50 % 1 1 35658
40 % 1 1 31223
30 % 1 1 26098

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3LLZ 1 A Agglutinin alpha chain 3496
2 1JOT 1 A AGGLUTININ 3496
3 3LM1 1 A, C, E, G, I, K, M, O Agglutinin alpha chain 3496
4 3LLY 1 A Agglutinin alpha chain 3496