Sequence Similarity Clusters for the Entities in PDB 1JOT

Entity #1 | Chains: A
AGGLUTININ protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 6594
95 % 2 4 6743 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 6728
70 % 26 36 389
50 % 33 49 277
40 % 33 49 309
30 % 63 93 215
Entity #2 | Chains: B
AGGLUTININ protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62243
95 % 1 1 50640
90 % 1 1 48049
70 % 1 1 42100
50 % 1 1 35721
40 % 1 1 31274
30 % 1 1 26136

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4R6R 1 A, C, E, G Agglutinin alpha chain 3490
2 4R6O 1 A, C, E, G Agglutinin alpha chain UNP RESIDUES 2-20 3490
3 5BN6 2 E, F, G, H Jacalin 3489
4 4AK4 1 A, C, E, G, I, K, M, O AGGLUTININ ALPHA CHAIN 3490
5 4R6Q 1 A, C, E, G Agglutinin alpha chain 3490
6 1UGX 1 A Agglutinin alpha chain 3490
7 3LLZ 1 A Agglutinin alpha chain 3496
8 5J51 1 A, C, E, G Agglutinin alpha chain 3490
9 1M26 1 A, C, E, G Jacalin, alpha chain complexed with T-antigen residues 85-217 of GB sequence entry AA32678 3490
10 4R6N 1 A, C, E, G Agglutinin alpha chain 3490
11 4R6P 1 A, C, E, G Agglutinin alpha chain 3490
12 5J4X 1 A, C, E, G Agglutinin alpha chain 3490
13 1UGW 1 A, G Agglutinin alpha chain 3490
14 1UGW 3 C, E Agglutinin alpha-chain 3490
15 1KU8 1 A, C, E, G JACALIN ALPHA CHAIN 3490
16 1WS4 1 A, G Agglutinin alpha chain 3490
17 1WS4 3 C, E Agglutinin alpha chain 3490
18 1WS5 1 A, G Agglutinin alpha chain 3490
19 1WS5 3 C, E Agglutinin alpha chain 3490
20 4AKB 1 A, C, E, G AGGLUTININ ALPHA CHAIN 3490
21 1PXD 1 A Agglutinin alpha chain 3490
22 5J4T 1 A, C, E, G Agglutinin alpha chain 3490
23 5JM1 1 A, C, E, G Agglutinin alpha chain 3490
24 1KUJ 1 A, C, E, G JACALIN ALPHA CHAIN 3490
25 5J50 1 A, C, E, G Agglutinin alpha chain 3490
26 1JOT 1 A AGGLUTININ 3496
27 3LM1 1 A, C, E, G, I, K, M, O Agglutinin alpha chain 3496
28 1JAC 1 A, C, E, G JACALIN 3489
29 1UGY 1 A, G Agglutinin alpha chain 3490
30 1UGY 3 C, E Agglutinin alpha chain 3490
31 4AKC 1 A, C, E, G AGGLUTININ ALPHA CHAIN 3490
32 3LLY 1 A Agglutinin alpha chain 3496
33 1TOQ 1 A, C, E, G AGGLUTININ ALPHA CHAIN 291940
34 1UH1 1 A, C, E, G Agglutinin alpha chain 3490
35 1UH0 1 A, C, E, G Agglutinin alpha chain 3490
36 1TP8 1 A, C, E, G AGGLUTININ ALPHA CHAIN 291940