Sequence Similarity Clusters for the Entities in PDB 1JOT

Entity #1 | Chains: A
AGGLUTININ protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 6892
95 % 2 4 7024 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 6997
70 % 26 36 396
50 % 33 49 300
40 % 42 66 250
30 % 80 111 206
Entity #2 | Chains: B
AGGLUTININ protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64168
95 % 1 1 52149
90 % 1 1 49433
70 % 1 1 43241
50 % 1 1 36686
40 % 1 1 32104
30 % 1 1 26846

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4R6R 1 A, C, E, G Agglutinin alpha chain 3490
2 4PIT 1 A, B, C, D Ripening-associated protein 4641
3 5TQZ 1 A, B, C, D Frutapin 194251
4 4PIU 1 A, B Ripening-associated protein 4641
5 5KRP 1 A, B, C, D Frutapin 194251
6 5M6O 1 A, B, C, D Frutapin 194251
7 4R6O 1 A, C, E, G Agglutinin alpha chain UNP RESIDUES 2-20 3490
8 5BN6 2 E, F, G, H Jacalin 3489
9 4AK4 1 A, C, E, G, I, K, M, O AGGLUTININ ALPHA CHAIN 3490
10 4R6Q 1 A, C, E, G Agglutinin alpha chain 3490
11 5GVY 1 A, B Salt stress-induced protein 4530
12 1UGX 1 A Agglutinin alpha chain 3490
13 3LLZ 1 A Agglutinin alpha chain 3496
14 5J51 1 A, C, E, G Agglutinin alpha chain 3490
15 1M26 1 A, C, E, G Jacalin, alpha chain complexed with T-antigen residues 85-217 of GB sequence entry AA32678 3490
16 4R6N 1 A, C, E, G Agglutinin alpha chain 3490
17 4PIK 1 A, B, C, D Ripening-associated protein 4641
18 4PIF 1 A, B, C, D Ripening-associated protein 4641
19 4R6P 1 A, C, E, G Agglutinin alpha chain 3490
20 5EXG 1 A, B Ripening-associated protein 4641
21 5J4X 1 A, C, E, G Agglutinin alpha chain 3490
22 6FLW 1 A, B, C, D Jacalin-like lectin 4615
23 1UGW 1 A, G Agglutinin alpha chain 3490
24 1UGW 3 C, E Agglutinin alpha-chain 3490
25 4WOG 1 A, B, C, D Frutalin 3488
26 1KU8 1 A, C, E, G JACALIN ALPHA CHAIN 3490
27 6FLZ 1 A, B Jacalin-like lectin 4615
28 1XXQ 1 A, B, C, D mannose-binding lectin 85232
29 1WS4 1 A, G Agglutinin alpha chain 3490
30 1WS4 3 C, E Agglutinin alpha chain 3490
31 1WS5 1 A, G Agglutinin alpha chain 3490
32 1WS5 3 C, E Agglutinin alpha chain 3490
33 4AKB 1 A, C, E, G AGGLUTININ ALPHA CHAIN 3490
34 1PXD 1 A Agglutinin alpha chain 3490
35 5J4T 1 A, C, E, G Agglutinin alpha chain 3490
36 5XFH 1 A, B Salt stress-induced protein 4530
37 5JM1 1 A, C, E, G Agglutinin alpha chain 3490
38 3P8S 1 A, B Jacalin beta-chain, alpha-chain 3489
39 1XXR 1 A, B, C, D mannose-binding lectin 85232
40 1KUJ 1 A, C, E, G JACALIN ALPHA CHAIN 3490
41 5J50 1 A, C, E, G Agglutinin alpha chain 3490
42 1JOT 1 A AGGLUTININ 3496
43 4AKD 1 A, B, C, D MANNOSE-SPECIFIC LECTIN KM+ 3490
44 3LM1 1 A, C, E, G, I, K, M, O Agglutinin alpha chain 3496
45 1JAC 1 A, C, E, G JACALIN 3489
46 1UGY 1 A, G Agglutinin alpha chain 3490
47 1UGY 3 C, E Agglutinin alpha chain 3490
48 4AKC 1 A, C, E, G AGGLUTININ ALPHA CHAIN 3490
49 3LLY 1 A Agglutinin alpha chain 3496
50 1J4T 1 A, B, C, D, E, F, G, H Artocarpin 3490
51 3MIT 1 A, B Lectin 4641
52 1VBO 1 A, B, C, D, E, F, G, H artocarpin 3490
53 1TOQ 1 A, C, E, G AGGLUTININ ALPHA CHAIN 291940
54 1J4S 1 A, B, C, D Artocarpin 3490
55 2BMZ 1 A, B RIPENING-ASSOCIATED PROTEIN 4641
56 1X1V 1 A, B lectin 4641
57 6FLY 1 A, B Jacalin-like lectin 4615
58 1UH1 1 A, C, E, G Agglutinin alpha chain 3490
59 1UH0 1 A, C, E, G Agglutinin alpha chain 3490
60 3MIU 1 A, B Lectin 4641
61 2BN0 1 A, B RIPENING-ASSOCIATED PROTEIN 4641
62 2BMY 1 A, B RIPENING-ASSOCIATED PROTEIN 4641
63 1TP8 1 A, C, E, G AGGLUTININ ALPHA CHAIN 291940
64 1J4U 1 A, B, C, D Artocarpin 3490
65 3MIV 1 A, B Lectin 4641
66 1VBP 1 A, B artocarpin 3490